I think you mischaracterized him, and I don't know if the House bill did follow, but it's not like he's said unequivocally that paper ballots are out.
http://www.bradblog.com/?p=3531BREAKING EXCLUSIVE: BOXER, DODD INTRODUCE 11th HOUR EMERGENCY PAPER BALLOT LEGISLATION IN SENATE!
Calls for 'Contingency Paper Ballots' in States, Counties this November to be Paid for by Feds!
Co-Author of HAVA is Co-Sponsor of New Bill Answering Our Call for a 'LET AMERICA VOTE ACT', Makes Paper Ballots Optional to States Rather Than Mandated...But We'll Take it! Sources Say House Bill to Follow Soon!
Senator Barbara Boxer (D-CA) and Senator Chris Dodd (D-CT) introduced emergency legislation to amend the Help America Vote Act (HAVA) this afternoon to offer funding to states and counties who make 'contingency paper ballots' available to voters to be used at the voter's option instead of electronic voting systems.
The so-called contingency paper ballots are intended to be counted as normal ballots, as opposed to Provisional Ballots which must be vetted first to determine the integrity of the voter's registration. Provisional ballots are frequently counted only several days after Election Day, and often, not at all. The Senate legislation as filed, however, does not spell out the intended difference between "contingency" and "provisional" ballots specifically.